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@ARTICLE{2021MNRAS.507.2671R,
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@ARTICLE{2021arXiv210802396R,
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        title = "Benchmarking Hall-Induced Magnetoacoustic to Alfv{\'e}n Mode Conversion in the Solar Chromosphere",
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@ARTICLE{2021SoPh..296...97P,
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@ARTICLE{2021JGRA..12629097S,
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        title = "Chromospheric Heating by Magnetohydrodynamic Waves and Instabilities",
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@INPROCEEDINGS{2020ASSP...57..121T,
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        title = "Study of Acoustic Halos in NOAA Active Region 12683",
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@ARTICLE{2019JPlPh..85f2003H,
       author = {{Hunana}, P. and {Tenerani}, A. and {Zank}, G.~P. and {Goldstein}, M.~L. and {Webb}, G.~M. and {Khomenko}, E. and {Collados}, M. and {Cally}, P.~S. and {Adhikari}, L. and {Velli}, M.},
        title = "An introductory guide to fluid models with anisotropic temperatures. Part 2. Kinetic theory, Pad{\'e} approximants and Landau fluid closures",
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@ARTICLE{2019JPlPh..85f2002H,
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        title = "An introductory guide to fluid models with anisotropic temperatures. Part 1. CGL description and collisionless fluid hierarchy",
      journal = {Journal of Plasma Physics},
         year = 2019,
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@ARTICLE{2019ApJ...885...58C,
       author = {{Cally}, Paul S. and {Khomenko}, Elena},
        title = "Fast-to-Alfv{\'e}n Mode Conversion and Ambipolar Heating in Structured Media. I. Simplified Cold Plasma Model",
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@ARTICLE{2019SoPh..294..147R,
       author = {{Raboonik}, Abbas and {Cally}, Paul S.},
        title = "Hall-coupling of Slow and Alfv{\'e}n Waves at Low Frequencies in the Lower Solar Atmosphere",
      journal = {\solphys},
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@ARTICLE{2019ApJ...883..179K,
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        title = "Fast-to-Alfv{\'e}n Mode Conversion and Ambipolar Heating in Structured Media. II. Numerical Simulation",
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@ARTICLE{2019ApJ...881L..21P,
       author = {{Pennicott}, Jamon D. and {Cally}, Paul S.},
        title = "Smoothing of MHD Shocks in Mode Conversion",
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@ARTICLE{2019ApJ...870...94G,
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        title = "Fast-to-Alfv{\'e}n Mode Conversion Mediated by Hall Current. II. Application to the Solar Atmosphere",
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@INPROCEEDINGS{2018csc..confE.130T,
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        title = "Investigation of Acoustic Halos using Multi-Height SDO Observations",
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@ARTICLE{2018A&A...613A..73D,
       author = {{Duvall}, Thomas L., Jr. and {Cally}, Paul S. and {Przybylski}, Damien and {Nagashima}, Kaori and {Gizon}, Laurent},
        title = "Probing sunspots with two-skip time-distance helioseismology",
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@ARTICLE{2018ApJ...856...20C,
       author = {{Cally}, Paul S. and {Khomenko}, Elena},
        title = "Fast-to-Alfv{\'e}n Mode Conversion in the Presence of Ambipolar Diffusion",
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@ARTICLE{2018ApJ...853..144D,
       author = {{Dikpati}, Mausumi and {McIntosh}, Scott W. and {Bothun}, Gregory and {Cally}, Paul S. and {Ghosh}, Siddhartha S. and {Gilman}, Peter A. and {Umurhan}, Orkan M.},
        title = "Role of Interaction between Magnetic Rossby Waves and Tachocline Differential Rotation in Producing Solar Seasons",
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@ARTICLE{2018JPhA...51b5501C,
       author = {{Cally}, Paul S. and {Xiong}, Ming},
        title = "Sensitivity of coronal loop sausage mode frequencies and decay rates to radial and longitudinal density inhomogeneities: a spectral approach",
      journal = {Journal of Physics A Mathematical General},
         year = 2018,
       volume = {51},
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@ARTICLE{2018AdSpR..61..691T,
       author = {{Tripathy}, S.~C. and {Jain}, K. and {Kholikov}, S. and {Hill}, F. and {Rajaguru}, S.~P. and {Cally}, P.~S.},
        title = "A study of acoustic halos in active region NOAA 11330 using multi-height SDO observations",
      journal = {Advances in Space Research},
         year = 2018,
       volume = {61},
       number = {2},
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@ARTICLE{2017NatSR...714750D,
       author = {{Dikpati}, Mausumi and {Cally}, Paul S. and {McIntosh}, Scott W. and {Heifetz}, Eyal},
        title = "The Origin of the ``Seasons'' in Space Weather",
      journal = {Scientific Reports},
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@ARTICLE{2017MNRAS.466..413C,
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        title = "Alfv{\'e}n waves in the structured solar corona",
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@INCOLLECTION{2017hdsi.book..257L,
       author = {{L{\"o}ptien}, Bj{\"o}rn and {Birch}, Aaron C. and {Gizon}, Laurent and {Schou}, Jesper and {Appourchaux}, Thierry and {Blanco Rodr{\'\i}guez}, Juli{\'a}n and {Cally}, Paul S. and {Dominguez-Tagle}, Carlos and {Gandorfer}, Achim and {Hill}, Frank and {Hirzberger}, Johann and {Scherrer}, Philip H. and {Solanki}, Sami K.},
        title = "Helioseismology with Solar Orbiter",
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@INPROCEEDINGS{2016usc..confE..85T,
       author = {{Tripathy Sushanta C.} and {Jain}, Kiran and {Kholikov}, Shukur and {Hill}, Frank and {Cally}, Paul S.},
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@INPROCEEDINGS{2016SPD....47.1009N,
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@INPROCEEDINGS{2016SPD....47.0721T,
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        title = "Seismology and the Wounded Sun",
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@ARTICLE{2016IAUTA..29..245S,
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@ARTICLE{2016SoPh..291..727H,
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@ARTICLE{2016MNRAS.456.1826H,
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@ARTICLE{2016GMS...216..489C,
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@ARTICLE{2016ApJ...817...45R,
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@ARTICLE{2015SSRv..196..251L,
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        title = "Helioseismology with Solar Orbiter",
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@ARTICLE{2015ApJ...814..106C,
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@ARTICLE{2015SoPh..290.1889H,
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@ARTICLE{2015ApJ...807...20P,
       author = {{Przybylski}, D. and {Shelyag}, S. and {Cally}, P.~S.},
        title = "Spectropolarimetrically Accurate Magnetohydrostatic Sunspot Model for Forward Modeling in Helioseismology",
      journal = {\apj},
         year = 2015,
       volume = {807},
       number = {1},
          eid = {20},
        pages = {20},
          doi = {10.1088/0004-637X/807/1/20},
archivePrefix = {arXiv},
       eprint = {1504.02189},
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@ARTICLE{2015MNRAS.449.3074M,
       author = {{Moradi}, H. and {Cally}, P.~S. and {Przybylski}, D. and {Shelyag}, S.},
        title = "Directional time-distance probing of model sunspot atmospheres",
      journal = {\mnras},
         year = 2015,
       volume = {449},
       number = {3},
        pages = {3074-3081},
          doi = {10.1093/mnras/stv506},
archivePrefix = {arXiv},
       eprint = {1503.04270},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2015ApJ...801...27R,
       author = {{Rijs}, Carlos and {Moradi}, Hamed and {Przybylski}, Damien and {Cally}, Paul S.},
        title = "MHD Wave Refraction and the Acoustic Halo Effect around Solar Active Regions: A 3D Study",
      journal = {\apj},
         year = 2015,
       volume = {801},
       number = {1},
          eid = {27},
        pages = {27},
          doi = {10.1088/0004-637X/801/1/27},
archivePrefix = {arXiv},
       eprint = {1501.01074},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2014SoPh..289.4425H,
       author = {{Hansen}, Shelley C. and {Cally}, Paul S.},
        title = "Time-Distance Seismology and the Solar Transition Region",
      journal = {\solphys},
         year = 2014,
       volume = {289},
       number = {12},
        pages = {4425-4432},
          doi = {10.1007/s11207-014-0600-0},
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@ARTICLE{2014ApJ...791..129H,
       author = {{Hanson}, Chris S. and {Cally}, Paul S.},
        title = "The Scattering of f- and p-modes from Ensembles of Thin Magnetic Flux Tubes: An Analytical Approach",
      journal = {\apj},
         year = 2014,
       volume = {791},
       number = {2},
          eid = {129},
        pages = {129},
          doi = {10.1088/0004-637X/791/2/129},
archivePrefix = {arXiv},
       eprint = {1407.0780},
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@INPROCEEDINGS{2014AAS...22411204H,
       author = {{Hanson}, Chris S and {Cally}, Paul S},
        title = "An Analytical Approach to Scattering Regimes Between Thin Magnetic Flux Tubes Within an Ensemble",
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         year = 2014,
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@ARTICLE{2014ApJ...782L..26M,
       author = {{Moradi}, Hamed and {Cally}, Paul S.},
        title = "Sensitivity of Helioseismic Travel Times to the Imposition of a Lorentz Force Limiter in Computational Helioseismology",
      journal = {\apjl},
         year = 2014,
       volume = {782},
       number = {2},
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@ARTICLE{2014ApJ...781..125H,
       author = {{Hanson}, Chris S. and {Cally}, Paul S.},
        title = "An Analytical Approach to Scattering between Two thin Magnetic Flux Tubes in a Stratified Atmosphere",
      journal = {\apj},
         year = 2014,
       volume = {781},
       number = {2},
          eid = {125},
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          doi = {10.1088/0004-637X/781/2/125},
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       eprint = {1401.0027},
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@INPROCEEDINGS{2013ASPC..478..263M,
       author = {{Moradi}, H. and {Cally}, P.~S.},
        title = "Helioseismic Implications of Mode Conversion",
    booktitle = {Fifty Years of Seismology of the Sun and Stars},
         year = 2013,
       editor = {{Jain}, K. and {Tripathy}, S.~C. and {Hill}, F. and {Leibacher}, J.~W. and {Pevtsov}, A.~A.},
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        pages = {263},
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@ARTICLE{2013MNRAS.435.2589C,
       author = {{Cally}, Paul S. and {Moradi}, Hamed},
        title = "Seismology of the wounded Sun",
      journal = {\mnras},
         year = 2013,
       volume = {435},
       number = {3},
        pages = {2589-2597},
          doi = {10.1093/mnras/stt1473},
archivePrefix = {arXiv},
       eprint = {1308.1184},
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@ARTICLE{2013ApJ...776L...4S,
       author = {{Shelyag}, S. and {Cally}, P.~S. and {Reid}, A. and {Mathioudakis}, M.},
        title = "Alfv{\'e}n Waves in Simulations of Solar Photospheric Vortices",
      journal = {\apjl},
         year = 2013,
       volume = {776},
       number = {1},
          eid = {L4},
        pages = {L4},
          doi = {10.1088/2041-8205/776/1/L4},
archivePrefix = {arXiv},
       eprint = {1309.2019},
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@INPROCEEDINGS{2013JPhCS.440a2047M,
       author = {{Moradi}, H. and {Cally}, P.~S.},
        title = "Modelling Fast-Alfv{\'e}n Mode Conversion Using SPARC",
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@INPROCEEDINGS{2013JPhCS.440a1001C,
       author = {{Cally}, Paul and {Erd{\'e}lyi}, Robert and {Norton}},
        title = "PREFACE:  Eclipse on the Coral Sea: Cycle 24 Ascending",
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         year = 2013,
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@INPROCEEDINGS{2013hsa7.conf..806C,
       author = {{Calvo Santamaria}, I. and {Khomenko}, E. and {Cally}, P.~S. and {Collados}, M.},
        title = "MHD wave propagation in the solar network",
    booktitle = {Highlights of Spanish Astrophysics VII},
         year = 2013,
       editor = {{Guirado}, J.~C. and {Lara}, L.~M. and {Quilis}, V. and {Gorgas}, J.},
        pages = {806-806},
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@ARTICLE{2013ApJ...768...35C,
       author = {{Cally}, Paul S.},
        title = "Near- and Far-field Response to Compact Acoustic Sources in Stratified Convection Zones",
      journal = {\apj},
         year = 2013,
       volume = {768},
       number = {1},
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@ARTICLE{2012SoPh..280...33C,
       author = {{Cally}, P.~S.},
        title = "Alfv{\'e}n Reflection and Reverberation in the Solar Atmosphere",
      journal = {\solphys},
         year = 2012,
       volume = {280},
       number = {1},
        pages = {33-50},
          doi = {10.1007/s11207-012-0052-3},
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       eprint = {1206.2114},
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@INCOLLECTION{2012asst.book...31B,
       author = {{Besliu-Ionescu}, Diana and {Donea}, Alina and {Cally}, Paul and {Lindsey}, Charles},
        title = "Web-based Comprehensive Data Archive of Seismically Active Solar Flares",
    booktitle = {Advances in Solar and Solar-Terrestrial Physics},
         year = 2012,
        pages = {31},
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@ARTICLE{2012ApJ...751...31H,
       author = {{Hansen}, Shelley C. and {Cally}, Paul S.},
        title = "Benchmarking Fast-to-Alfv{\'e}n Mode Conversion in a Cold MHD Plasma. II. How to Get Alfv{\'e}n Waves through the Solar Transition Region",
      journal = {\apj},
         year = 2012,
       volume = {751},
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@ARTICLE{2012ApJ...746...68K,
       author = {{Khomenko}, E. and {Cally}, P.~S.},
        title = "Numerical Simulations of Conversion to Alfv{\'e}n Waves in Sunspots",
      journal = {\apj},
         year = 2012,
       volume = {746},
       number = {1},
          eid = {68},
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       eprint = {1111.2851},
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@ARTICLE{2011ApJ...743..164A,
       author = {{Andries}, J. and {Cally}, P.~S.},
        title = "On the Dispersion and Scattering of Magnetohydrodynamic Waves by Longitudinally Stratified Flux Tubes",
      journal = {\apj},
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       number = {2},
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@ARTICLE{2011MNRAS.417.1162N,
       author = {{Newington}, Marie E. and {Cally}, Paul S.},
        title = "Mode conversion of radiatively damped magnetogravity waves in the solar chromosphere",
      journal = {\mnras},
         year = 2011,
       volume = {417},
       number = {2},
        pages = {1162-1169},
          doi = {10.1111/j.1365-2966.2011.19332.x},
archivePrefix = {arXiv},
       eprint = {1107.2208},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2011ApJ...739....4D,
       author = {{Dikpati}, Mausumi and {Cally}, Paul S.},
        title = "Analyses Of Three-dimensional Magnetohydrodynamic Instability of Antisolar Latitudinal Differential Rotation in F, G, and K Stars",
      journal = {\apj},
         year = 2011,
       volume = {739},
       number = {1},
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       eprint = {1107.2434},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2011ApJ...738..119C,
       author = {{Cally}, Paul S. and {Hansen}, Shelley C.},
        title = "Benchmarking Fast-to-Alfv{\'e}n Mode Conversion in a Cold Magnetohydrodynamic Plasma",
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         year = 2011,
       volume = {738},
       number = {2},
          eid = {119},
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       eprint = {1105.5754},
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@ARTICLE{2011SoPh..269..105H,
       author = {{Hanson}, Chris S. and {Cally}, Paul S.},
        title = "Resonant Absorption as Mode Conversion? II. Temporal Ray Bundle",
      journal = {\solphys},
         year = 2011,
       volume = {269},
       number = {1},
        pages = {105-110},
          doi = {10.1007/s11207-010-9681-6},
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       eprint = {1011.3808},
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@INPROCEEDINGS{2011JPhCS.271a2042K,
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        title = "Numerical simulations of conversion to Alfv{\'e}n waves in solar active regions",
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@INPROCEEDINGS{2011JPhCS.271a2037N,
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        title = "How to turn gravity waves into Alfv{\'e}n waves and other such tricks",
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@INPROCEEDINGS{2011ASInC...2..397C,
       author = {{Cally}, P.~S. and {Wheatland}, M.~S. and {Cairns}, I.~H. and {Melrose}, D.~B.},
        title = "Solar physics research in Australia",
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@INPROCEEDINGS{2011ASInC...2..221C,
       author = {{Cally}, P.~S.},
        title = "Alfv{\'e}n waves are easy: mode conversion in magnetic regions",
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@ARTICLE{2010HiA....15..349C,
       author = {{Cally}, Paul S.},
        title = "How surface magnetism affects helioseismic waves",
      journal = {Highlights of Astronomy},
         year = 2010,
       volume = {15},
        pages = {349-350},
          doi = {10.1017/S1743921310009725},
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@ARTICLE{2010SoPh..266...17C,
       author = {{Cally}, P.~S. and {Andries}, J.},
        title = "Resonant Absorption as Mode Conversion?",
      journal = {\solphys},
         year = 2010,
       volume = {266},
       number = {1},
        pages = {17-38},
          doi = {10.1007/s11207-010-9612-6},
archivePrefix = {arXiv},
       eprint = {1007.1808},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2010ApJ...719.1144L,
       author = {{Lindsey}, C. and {Cally}, P.~S. and {Rempel}, M.},
        title = "Seismic Discrimination of Thermal and Magnetic Anomalies in Sunspot Umbrae",
      journal = {\apj},
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       volume = {719},
       number = {2},
        pages = {1144-1156},
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@ARTICLE{2010MNRAS.402..386N,
       author = {{Newington}, Marie E. and {Cally}, Paul S.},
        title = "Reflection and conversion of magnetogravity waves in the solar chromosphere: windows to the upper atmosphere",
      journal = {\mnras},
         year = 2010,
       volume = {402},
       number = {1},
        pages = {386-394},
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@ARTICLE{2009SoPh..260..251H,
       author = {{Hollerbach}, R. and {Cally}, P.~S.},
        title = "Nonlinear Evolution of Axisymmetric Twisted Flux Tubes in the Solar Tachocline",
      journal = {\solphys},
         year = 2009,
       volume = {260},
       number = {2},
        pages = {251-260},
          doi = {10.1007/s11207-009-9447-1},
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       eprint = {0909.3809},
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@INPROCEEDINGS{2009ASPC..416..525D,
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        title = "Axisymmetric MHD Instabilities in Solar/Stellar Tachoclines",
    booktitle = {Solar-Stellar Dynamos as Revealed by Helio- and Asteroseismology: GONG 2008/SOHO 21},
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@INPROCEEDINGS{2009ASPC..416..143M,
       author = {{Moradi}, H. and {Hanasoge}, S.~M. and {Cally}, P.~S.},
        title = "Investigating The Role of Strong Magnetic Fields on Helioseismic Wave Propagation and the Consequences for Time-Distance Helioseismology",
    booktitle = {Solar-Stellar Dynamos as Revealed by Helio- and Asteroseismology: GONG 2008/SOHO 21},
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@INPROCEEDINGS{2009ASPC..416....3C,
       author = {{Cally}, P.~S.},
        title = "Seismology and the Dynamo: History and Prospects",
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         year = 2009,
       editor = {{Dikpati}, M. and {Arentoft}, T. and {Gonz{\'a}lez Hern{\'a}ndez}, I. and {Lindsey}, C. and {Hill}, F.},
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@INPROCEEDINGS{2009SPD....40.0702L,
       author = {{Lindsey}, Charles A. and {Cally}, P.~S.},
        title = "Discriminating Thermal and Magnetic Seismic Anomalies in Sunspot Umbrae",
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@ARTICLE{2009MNRAS.395.1309C,
       author = {{Cally}, Paul S.},
        title = "Magnetic and thermal phase shifts in the local helioseismology of sunspots",
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        title = "Multiple Scattering of Waves by a Pair of Gravitationally Stratified Flux Tubes",
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       volume = {697},
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          doi = {10.1088/0004-637X/697/1/651},
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@ARTICLE{2009SoPh..255..193H,
       author = {{Hansen}, Shelley C. and {Cally}, Paul S.},
        title = "An Exact Test of Generalised Ray Theory in Local Helioseismology",
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       number = {2},
          eid = {193},
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@ARTICLE{2009arXiv0902.1581H,
       author = {{Hansen}, Shelley C. and {Cally}, Paul S.},
        title = "An Exact Test of Generalized Ray Theory in Local Helioseismology",
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@ARTICLE{2009SoPh..254..241C,
       author = {{Cally}, P.~S.},
        title = "Phase Jumps in Local Helioseismology",
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@ARTICLE{2009ApJ...692.1421D,
       author = {{Dikpati}, Mausumi and {Gilman}, Peter A. and {Cally}, Paul S. and {Miesch}, Mark S.},
        title = "Axisymmetric MHD Instabilities in Solar/Stellar Tachoclines",
      journal = {\apj},
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@ARTICLE{2009ApJ...690L..72M,
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        title = "Numerical Models of Travel-Time Inhomogeneities in Sunspots",
      journal = {\apjl},
         year = 2009,
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       number = {1},
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          doi = {10.1088/0004-637X/690/1/L72},
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@ARTICLE{2008MNRAS.391..891C,
       author = {{Cally}, Paul S. and {Dikpati}, Mausumi and {Gilman}, Peter A.},
        title = "Three-dimensional magneto-shear instabilities in the solar tachocline - II. Axisymmetric case",
      journal = {\mnras},
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       volume = {391},
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@ARTICLE{2008MNRAS.389.1905M,
       author = {{Mart{\'\i}nez-Oliveros}, J.~C. and {Donea}, A. -C. and {Cally}, P.~S. and {Moradi}, H.},
        title = "Helioseismic analysis of the solar flare-induced sunquake of 2005 January 15 - II. A magnetoseismic study",
      journal = {\mnras},
         year = 2008,
       volume = {389},
       number = {4},
        pages = {1905-1910},
          doi = {10.1111/j.1365-2966.2008.13722.x},
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@INPROCEEDINGS{2008JPhCS.118a2037M,
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        title = "Three-dimensional ray propagation in a toy sunspot",
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@ARTICLE{2008SoPh..251..341S,
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@ARTICLE{2008SoPh..251..309M,
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        title = "Time - Distance Modelling in a Simulated Sunspot Atmosphere",
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         year = 2008,
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@ARTICLE{2008SoPh..251..251C,
       author = {{Cally}, P.~S. and {Goossens}, M.},
        title = "Three-Dimensional MHD Wave Propagation and Conversion to Alfv{\'e}n Waves near the Solar Surface. I. Direct Numerical Solution",
      journal = {\solphys},
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@ARTICLE{2008SoPh..251....1G,
       author = {{Gizon}, Laurent and {Cally}, Paul and {Leibacher}, John},
        title = "Preface",
      journal = {\solphys},
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       volume = {251},
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@INPROCEEDINGS{2008AIPC.1043..252B,
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        title = "A Comparison of the Acoustic Hardness of Acoustically Active and Non-Active Solar Flares",
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@INPROCEEDINGS{2008IAUS..247..110M,
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@INPROCEEDINGS{2008IAUS..247...99M,
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@INPROCEEDINGS{2008ASPC..383..297B,
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        title = "Recent Developments in Solar Quakes Studies",
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@INPROCEEDINGS{2008ASPC..383..141L,
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        title = "Signatures of Seismic Absorption in Magnetic Regions",
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@ARTICLE{2007SoPh..245..121M,
       author = {{Mart{\'\i}nez-Oliveros}, J.~C. and {Moradi}, H. and {Besliu-Ionescu}, D. and {Donea}, A. -C. and {Cally}, P.~S. and {Lindsey}, C.},
        title = "From Gigahertz to Millihertz: A Multiwavelength Study of the Acoustically Active 14 August 2004 M7.4 Solar Flare",
      journal = {\solphys},
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@ARTICLE{2007A&A...469.1155B,
       author = {{Bloomfield}, D.~S. and {Solanki}, S.~K. and {Lagg}, A. and {Borrero}, J.~M. and {Cally}, P.~S.},
        title = "Modified p-modes in penumbral filaments?",
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@ARTICLE{2007AN....328..298L,
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        title = "Magnetoseismic signatures and flow diagnostics beneath magnetic regions",
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@ARTICLE{2007AN....328..292S,
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        title = "Surface magnetic field effects in local helioseismology",
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          doi = {10.1002/asna.200610732},
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@ARTICLE{2007AN....328..286C,
       author = {{Cally}, P.~S.},
        title = "What to look for in the seismology of solar active regions",
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@INPROCEEDINGS{2007sota.conf..243G,
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        title = "Global MHD instabilities of the tachocline",
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@ARTICLE{2007RoAJ...17S..83B,
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@ARTICLE{2007MNRAS.374.1155M,
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        title = "Helioseismic analysis of the solar flare-induced sunquake of 2005 January 15",
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@ARTICLE{2007AdSpR..40.1921B,
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@ARTICLE{2006SoPh..239..113D,
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@ARTICLE{2006MNRAS.372..551S,
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@INPROCEEDINGS{2006ESASP.624E...5S,
       author = {{Schunker}, H. and {Cally}, P.},
        title = "Observed and simulated photospheric velocities within inclined magnetic fields",
    booktitle = {Proceedings of SOHO 18/GONG 2006/HELAS I, Beyond the spherical Sun},
         year = 2006,
       editor = {{Fletcher}, Karen and {Thompson}, Michael},
       series = {ESA Special Publication},
       volume = {624},
          eid = {5},
        pages = {5},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006ESASP.624E...5S},
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@INPROCEEDINGS{2006IAUJD..17E..16S,
       author = {{Schunker}, H. and {Braun}, D.~C. and {Cally}, P.~S. and {Lindsey}, C.},
        title = "The interaction between acoustic waves and inclined magnetic fields near the {\ensuremath{\beta}}\raisebox{-0.5ex}~1 layer",
    booktitle = {IAU Joint Discussion},
         year = 2006,
       series = {IAU Joint Discussion},
       volume = {26},
          eid = {16},
        pages = {16},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006IAUJD..17E..16S},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2006RSPTA.364..333C,
       author = {{Cally}, P.~S.},
        title = "Dispersion relations, rays and ray splitting in magnetohelioseismology",
      journal = {Phil.\ Trans.\ Royal Soc.\ London A},
         year = 2006,
       volume = {364},
       number = {1839},
        pages = {333-349},
          doi = {10.1098/rsta.2005.1702},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006RSPTA.364..333C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2006SoPh..233...79C,
       author = {{Cally}, P.~S.},
        title = "Note on the Initial Value Problem for Coronal Loop Kink Waves",
      journal = {\solphys},
         year = 2006,
       volume = {233},
       number = {1},
        pages = {79-87},
          doi = {10.1007/s11207-006-2653-1},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006SoPh..233...79C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2006RoAJ...16S.203B,
       author = {{Be{\c{s}}liu-Ionescu}, D. and {Donea}, A. -C. and {Cally}, P. and {Lindsey}, C.},
        title = "Significant Acoustic Activity in AR10720 on January 15, 2005",
      journal = {Romanian Astronomical Journal},
         year = 2006,
       volume = {16},
        pages = {203},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006RoAJ...16S.203B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2006IAUS..233..385B,
       author = {{Besliu-Ionescu}, Diana and {Donea}, Alina-C. and {Cally}, Paul and {Lindsey}, Charles},
        title = "Seismic Radiation from M-class Solar Flares",
    booktitle = {Solar Activity and its Magnetic Origin},
         year = 2006,
       editor = {{Bothmer}, Volker and {Hady}, Ahmed Abdel},
       volume = {233},
        pages = {385-386},
          doi = {10.1017/S1743921306002250},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2006IAUS..233..385B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2005ESASP.600E.111B,
       author = {{Besliu-Ionescu}, D. and {Donea}, A. -C. and {Cally}, P. and {Lindsey}, C.},
        title = "a Survey of X-Class Solar Flares during 2001 and 2002 IN Search for Seismic Radiation",
    booktitle = {The Dynamic Sun: Challenges for Theory and Observations},
         year = 2005,
       editor = {{Danesy}, D. and {Poedts}, S. and {de Groof}, A. and {Andries}, J.},
       series = {ESA Special Publication},
       volume = {11},
          eid = {111.1},
        pages = {111.1},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005ESASP.600E.111B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2005MNRAS.363.1188C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S. and {Charbonneau}, P. and {Braun}, D.~C. and {Desjardins}, M.},
        title = "Genetic magnetohelioseismology with Hankel analysis data",
      journal = {\mnras},
         year = 2005,
       volume = {363},
       number = {4},
        pages = {1188-1204},
          doi = {10.1111/j.1365-2966.2005.09515.x},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005MNRAS.363.1188C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2005AGUSMSP23C..04C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S. and {Charbonneau}, P. and {Desjardins}, M.},
        title = "Modelling the Interaction of p-modes With Sunspots",
    booktitle = {AGU Spring Meeting Abstracts},
         year = 2005,
       volume = {2005},
          eid = {SP23C-04},
        pages = {SP23C-04},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005AGUSMSP23C..04C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2005AGUSMSP23C..03B,
       author = {{Braun}, D.~C. and {Schunker}, H. and {Lindsey}, C. and {Cally}, P.~S.},
        title = "Towards Assessing, Understanding, and Correcting the Influence of Surface Magnetism in Local Helioseismology",
    booktitle = {AGU Spring Meeting Abstracts},
         year = 2005,
       volume = {2005},
          eid = {SP23C-03},
        pages = {SP23C-03},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005AGUSMSP23C..03B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2005MNRAS.358..353C,
       author = {{Cally}, P.~S.},
        title = "Local magnetohelioseismology of active regions",
      journal = {\mnras},
         year = 2005,
       volume = {358},
       number = {2},
        pages = {353-362},
          doi = {10.1111/j.1365-2966.2005.08742.x},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005MNRAS.358..353C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2005SoPh..227....1C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S.},
        title = "Mode Conversion of Solar p-Modes in Non-Vertical Magnetic Fields",
      journal = {\solphys},
         year = 2005,
       volume = {227},
       number = {1},
        pages = {1-26},
          doi = {10.1007/s11207-005-8188-z},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005SoPh..227....1C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2005ApJ...621L.149S,
       author = {{Schunker}, H. and {Braun}, D.~C. and {Cally}, P.~S. and {Lindsey}, C.},
        title = "The Local Helioseismology of Inclined Magnetic Fields and the Showerglass Effect",
      journal = {\apjl},
         year = 2005,
       volume = {621},
       number = {2},
        pages = {L149-L152},
          doi = {10.1086/429290},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005ApJ...621L.149S},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2005RoAJ...15...33B,
       author = {{Be{\c{s}}liu}, Diana and {Donea}, Alina-Catalina and {Cally}, Paul and {Maris}, Georgeta},
        title = "Simultaneous Magnetic Field Time Series in AR10486 and AR10488 During the Period October 29--31, 2003",
      journal = {Romanian Astronomical Journal},
         year = 2005,
       volume = {15},
        pages = {33},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005RoAJ...15...33B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2005HiA....13..435C,
       author = {{Cally}, P.~S. and {Crouch}, A.~D.},
        title = "Observations and Interpretation of Subsurface Magnetic Structures",
      journal = {Highlights of Astronomy},
         year = 2005,
       volume = {13},
        pages = {435},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2005HiA....13..435C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2004ESASP.559..392C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S.},
        title = "What can P-Mode Absorption and Phase Shift Data Currently Tell us about the Subsurface Structure of Sunspots? Preliminary Results",
    booktitle = {SOHO 14 Helio- and Asteroseismology: Towards a Golden Future},
         year = 2004,
       editor = {{Danesy}, D.},
       series = {ESA Special Publication},
       volume = {559},
        pages = {392},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ESASP.559..392C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2004ESASP.559..227S,
       author = {{Schunker}, H. and {Braun}, D.~C. and {Lindsey}, C. and {Cally}, P.~S.},
        title = "Local Helioseismology of Inclined Magnetic Fields and the Showerglass Effect",
    booktitle = {SOHO 14 Helio- and Asteroseismology: Towards a Golden Future},
         year = 2004,
       editor = {{Danesy}, D.},
       series = {ESA Special Publication},
       volume = {559},
        pages = {227},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ESASP.559..227S},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2004ESASP.559..213C,
       author = {{Cally}, P.~S.},
        title = "Acoustics of Surface Magnetic Fields",
    booktitle = {SOHO 14 Helio- and Asteroseismology: Towards a Golden Future},
         year = 2004,
       editor = {{Danesy}, D.},
       series = {ESA Special Publication},
       volume = {559},
        pages = {213},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ESASP.559..213C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2004ApJ...610..597D,
       author = {{Dikpati}, Mausumi and {Cally}, Paul S. and {Gilman}, Peter A.},
        title = "Linear Analysis and Nonlinear Evolution of Two-Dimensional Global Magnetohydrodynamic Instabilities in a Diffusive Tachocline",
      journal = {\apj},
         year = 2004,
       volume = {610},
       number = {1},
        pages = {597-615},
          doi = {10.1086/421383},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ApJ...610..597D},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2004IAUS..219..541C,
       author = {{Cally}, P.~S. and {Dikpati}, M. and {Gilman}, P.~A.},
        title = "The Solar Tachocline: Limiting Magneto-Tipping Instabilities",
    booktitle = {Stars as Suns : Activity, Evolution and Planets},
         year = 2004,
       editor = {{Dupree}, Andrea K. and {Benz}, Arnold O.},
       volume = {219},
        pages = {541},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004IAUS..219..541C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{2004ESASP.547...81C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S.},
        title = "Mode Conversion of Solar p-Modes In Non-Vertical Magnetic Fields",
    booktitle = {SOHO 13 Waves, Oscillations and Small-Scale Transients Events in the Solar Atmosphere:  Joint View from SOHO and TRACE},
         year = 2004,
       editor = {{Lacoste}, H.},
       series = {ESA Special Publication},
       volume = {547},
        pages = {81},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ESASP.547...81C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2004ESASP.547...15C,
       author = {{Cally}, P.~S.},
        title = "Absorption of Waves in Sunspots",
    booktitle = {SOHO 13 Waves, Oscillations and Small-Scale Transients Events in the Solar Atmosphere:  Joint View from SOHO and TRACE},
         year = 2004,
       editor = {{Lacoste}, H.},
       series = {ESA Special Publication},
       volume = {547},
        pages = {15},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2004ESASP.547...15C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2003MNRAS.346..381C,
       author = {{Cally}, P.~S. and {Crouch}, A.~D. and {Braun}, D.~C.},
        title = "Probing sunspot magnetic fields with p-mode absorption and phase shift data",
      journal = {\mnras},
         year = 2003,
       volume = {346},
       number = {2},
        pages = {381-389},
          doi = {10.1046/j.1365-2966.2003.07019.x},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003MNRAS.346..381C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2003A&A...410.1023R,
       author = {{R{\"u}edi}, I. and {Cally}, P.~S.},
        title = "A comparison between model calculations and observations of sunspot oscillations",
      journal = {\aap},
         year = 2003,
       volume = {410},
        pages = {1023-1028},
          doi = {10.1051/0004-6361:20031331},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003A&A...410.1023R},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2003SoPh..217...95C,
       author = {{Cally}, P.~S.},
        title = "Coronal Leaky Tube Waves and Oscillations Observed with Trace",
      journal = {\solphys},
         year = 2003,
       volume = {217},
       number = {1},
        pages = {95-108},
          doi = {10.1023/A:1027326916984},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003SoPh..217...95C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2003SoPh..214..201C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S.},
        title = "Mode Conversion of Solar p Modes in non-Vertical Magnetic Fields - i. two-Dimensional Model",
      journal = {\solphys},
         year = 2003,
       volume = {214},
       number = {2},
        pages = {201-226},
          doi = {10.1023/A:1024247617255},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003SoPh..214..201C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2003SPD....34.1903N,
       author = {{Norton}, A.~A. and {Gilman}, P.~A. and {Henney}, C.~J. and {Cally}, P.~S.},
        title = "The Search for a Tipped Toroidal Field",
    booktitle = {AAS/Solar Physics Division Meeting \#34},
         year = 2003,
       series = {AAS/Solar Physics Division Meeting},
       volume = {34},
          eid = {19.03},
        pages = {19.03},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003SPD....34.1903N},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2003MNRAS.339..957C,
       author = {{Cally}, P.~S.},
        title = "Three-dimensional magneto-shear instabilities in the solar tachocline",
      journal = {\mnras},
         year = 2003,
       volume = {339},
       number = {4},
        pages = {957-972},
          doi = {10.1046/j.1365-8711.2003.06236.x},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003MNRAS.339..957C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2003IAUJD..12E..43C,
       author = {{Cally}, Paul},
        title = "Observations and Interpretation of Sub-Surface Structures",
    booktitle = {IAU Joint Discussion},
         year = 2003,
       series = {IAU Joint Discussion},
       volume = {25},
        pages = {E43},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003IAUJD..12E..43C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2003ApJ...582.1190C,
       author = {{Cally}, Paul S. and {Dikpati}, Mausumi and {Gilman}, Peter A.},
        title = "Clamshell and Tipping Instabilities in a Two-dimensional Magnetohydrodynamic Tachocline",
      journal = {\apj},
         year = 2003,
       volume = {582},
       number = {2},
        pages = {1190-1205},
          doi = {10.1086/344746},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003ApJ...582.1190C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{2003ASPC..305..152C,
       author = {{Cally}, P.~S.},
        title = "Interaction of Solar p-modes with Magnetic Field",
    booktitle = {Magnetic Fields in O, B and A Stars: Origin and Connection to Pulsation, Rotation and Mass Loss},
         year = 2003,
       editor = {{Balona}, Luis A. and {Henrichs}, Huib F. and {Medupe}, Rodney},
       series = {Astron.\ Soc.\ Pacific Conf.\ Ser.},
       volume = {305},
        pages = {152},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2003ASPC..305..152C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2001SoPh..201..289H,
       author = {{Hennig}, B.~S. and {Cally}, P.~S.},
        title = "Numerical Solutions of Three-Dimensional Pressure-Bounded Magnetohydrostatic Flux Tubes",
      journal = {\solphys},
         year = 2001,
       volume = {201},
       number = {2},
        pages = {289-304},
          doi = {10.1023/A:1017574714036},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2001SoPh..201..289H},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2001SoPh..199..231C,
       author = {{Cally}, P.~S.},
        title = "Nonlinear Evolution of 2d Tachocline Instabilities",
      journal = {\solphys},
         year = 2001,
       volume = {199},
       number = {2},
        pages = {231-249},
          doi = {10.1023/A:1010390814663},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2001SoPh..199..231C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2001ApJ...548L.237M,
       author = {{McIntosh}, S.~W. and {Bogdan}, T.~J. and {Cally}, P.~S. and {Carlsson}, M. and {Hansteen}, V.~H. and {Judge}, P.~G. and {Lites}, B.~W. and {Peter}, H. and {Rosenthal}, C.~S. and {Tarbell}, T.~D.},
        title = "An Observational Manifestation of Magnetoatmospheric Waves in Internetwork Regions of the Chromosphere and Transition Region",
      journal = {\apjl},
         year = 2001,
       volume = {548},
       number = {2},
        pages = {L237-L241},
          doi = {10.1086/319103},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2001ApJ...548L.237M},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2001ApJ...548..473C,
       author = {{Cally}, P.~S.},
        title = "Note on an Exact Solution for Magnetoatmospheric Waves",
      journal = {\apj},
         year = 2001,
       volume = {548},
       number = {1},
        pages = {473-481},
          doi = {10.1086/318675},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2001ApJ...548..473C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2001PASA...18..243B,
       author = {{Barnes}, G. and {Cally}, P.~S.},
        title = "Frequency Dependent Ray Paths in Local Helioseismology",
      journal = {\pasa},
         year = 2001,
       volume = {18},
       number = {3},
        pages = {243-251},
          doi = {10.1071/AS01040},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2001PASA...18..243B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2000SoPh..194..189C,
       author = {{Cally}, P.~S.},
        title = "A Sufficient Condition for Instability in a Sheared Incompressible Magnetofluid",
      journal = {\solphys},
         year = 2000,
       volume = {194},
       number = {2},
        pages = {189-196},
          doi = {10.1023/A:1005291530412},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2000SoPh..194..189C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@ARTICLE{2000SoPh..193..373B,
       author = {{Barnes}, G. and {Cally}, P.~S.},
        title = "Mode Mixing by a Shallow Sunspot",
      journal = {\solphys},
         year = 2000,
       volume = {193},
        pages = {373-382},
          doi = {10.1023/A:1005244212648},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2000SoPh..193..373B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2000SoPh..192..395C,
       author = {{Cally}, P.~S.},
        title = "Modelling p-Mode Interaction with a Spreading Sunspot Field",
      journal = {\solphys},
         year = 2000,
       volume = {192},
        pages = {395-401},
          doi = {10.1023/A:1005213002513},
       adsurl = {https://ui.adsabs.harvard.edu/abs/2000SoPh..192..395C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1999ApJ...521..878C,
       author = {{Crouch}, A.~D. and {Cally}, P.~S.},
        title = "The Contribution by Thin Magnetic Flux Tubes to p-Mode Line Widths",
      journal = {\apj},
         year = 1999,
       volume = {521},
       number = {2},
        pages = {878-884},
          doi = {10.1086/307585},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1999ApJ...521..878C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{1999AAS...194.5607B,
       author = {{Bogdan}, T.~J. and {Barnes}, G.~K. and {Cally}, P.~S. and {Crouch}, A.~D.},
        title = "Interaction of P-Modes with Sunspots",
    booktitle = {AAS abstracts \#194},
         year = 1999,
       series = {AAS abstracts},
       volume = {194},
          eid = {56.07},
        pages = {56.07},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1999AAS...194.5607B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{1999soho....9E..47C,
       author = {{Cally}, Paul and {Bogdan}, Tom},
        title = "Modelling P-Mode Interaction with a Spreading Sunspot Field",
    booktitle = {SOHO-9 Workshop on Helioseismic Diagnostics of Solar Convection and Activity},
         year = 1999,
       volume = {9},
          eid = {47},
        pages = {47},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1999soho....9E..47C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{1999soho....9E..35B,
       author = {{Barnes}, G. and {Cally}, P.~S.},
        title = "Mode Mixing by a Shallow Sunspot",
    booktitle = {SOHO-9 Workshop on Helioseismic Diagnostics of Solar Convection and Activity},
         year = 1999,
       volume = {9},
          eid = {35},
        pages = {35},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1999soho....9E..35B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
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@INPROCEEDINGS{1999ASSL..243..337R,
       author = {{R{\"u}edi}, I. and {Solanki}, S.~K. and {Bogdan}, T. and {Cally}, P.},
        title = "Sunspot magnetic oscillations: Comparison between observations and models",
    booktitle = {Polarization},
         year = 1999,
       editor = {{Nagendra}, K.~N. and {Stenflo}, J.~O.},
       series = {Astrophysics and Space Science Library},
       volume = {243},
        pages = {337-347},
          doi = {10.1007/978-94-015-9329-8\_29},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1999ASSL..243..337R},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1998ApJ...497..464L,
       author = {{Lites}, Bruce W. and {Thomas}, John H. and {Bogdan}, Thomas J. and {Cally}, Paul S.},
        title = "Velocity and Magnetic Field Fluctuations in the Photosphere of a Sunspot",
      journal = {\apj},
         year = 1998,
       volume = {497},
       number = {1},
        pages = {464-482},
          doi = {10.1086/305451},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1998ApJ...497..464L},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1997ApJ...486L..67C,
       author = {{Cally}, P.~S. and {Bogdan}, T.~J.},
        title = "Simulation of f- and p-Mode Interactions with a Stratified Magnetic Field Concentration",
      journal = {\apjl},
         year = 1997,
       volume = {486},
       number = {1},
        pages = {L67-L70},
          doi = {10.1086/310833},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1997ApJ...486L..67C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1997RSPSA.453..943B,
       author = {{Bogdan}, T.~J. and {Cally}, P.~S.},
        title = "Waves in magnetized polytropes.",
      journal = {Proceedings of the Royal Society of London Series A},
         year = 1997,
       volume = {453},
       number = {1960},
        pages = {943-961},
          doi = {10.1098/rspa.1997.0052},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1997RSPSA.453..943B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1996ApJ...465..406B,
       author = {{Bogdan}, T.~J. and {Hindman}, B.~W. and {Cally}, P.~S. and {Charbonneau}, P.},
        title = "Absorption of p-Modes by Slender Magnetic Flux Tubes and p-Mode Lifetimes",
      journal = {\apj},
         year = 1996,
       volume = {465},
        pages = {406},
          doi = {10.1086/177429},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1996ApJ...465..406B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1996ApJ...459..760H,
       author = {{Hindman}, Bradley W. and {Zweibel}, Ellen G. and {Cally}, P.~S.},
        title = "Driven Acoustic Oscillations within a Vertical Magnetic Field",
      journal = {\apj},
         year = 1996,
       volume = {459},
        pages = {760},
          doi = {10.1086/176940},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1996ApJ...459..760H},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1995ApJ...453..919B,
       author = {{Bogdan}, T.~J. and {Cally}, P.~S.},
        title = "Jacket Modes: Solar Acoustic Oscillations Confined to Regions Surrounding Sunspots and Plage",
      journal = {\apj},
         year = 1995,
       volume = {453},
        pages = {919},
          doi = {10.1086/176452},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1995ApJ...453..919B},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1995JGR...10019441M,
       author = {{Mann}, Ian R. and {Wright}, Andrew N. and {Cally}, Paul S.},
        title = "Coupling of magnetospheric cavity modes to field line resonances: A study of resonance widths",
      journal = {\jgr},
         year = 1995,
       volume = {100},
       number = {A10},
        pages = {19441-19456},
          doi = {10.1029/95JA00820},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1995JGR...10019441M},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1995ApJ...451..372C,
       author = {{Cally}, P.~S.},
        title = "Effects of Weak-to-Moderate Vertical Magnetic Fields on Solar f- and p-Modes",
      journal = {\apj},
         year = 1995,
       volume = {451},
        pages = {372},
          doi = {10.1086/176226},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1995ApJ...451..372C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{1995ESASP.376b..77H,
       author = {{Hindman}, B.~W. and {Zweibel}, E.~G. and {Cally}, P.~S.},
        title = "Driven Acoustic Oscillations Within a Vertical Magnetic Field",
    booktitle = {Helioseismology},
         year = 1995,
       editor = {{Hoeksema}, J.~T. and {Domingo}, V. and {Fleck}, B. and {Battrick}, Bruce},
       series = {ESA Special Publication},
       volume = {376},
        pages = {77},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1995ESASP.376b..77H},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1994ApJ...437..505C,
       author = {{Cally}, P.~S. and {Bogdan}, T.~J. and {Zweibel}, E.~G.},
        title = "Umbral Oscillations in Sunspots: Absorption of p-Modes and Active Region Heating by Mode Conversion",
      journal = {\apj},
         year = 1994,
       volume = {437},
        pages = {505},
          doi = {10.1086/175014},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1994ApJ...437..505C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1994JPlPh..52..265C,
       author = {{Cally}, P.~S. and {Sedl{\'a}{\v{c}}ek}, Z.},
        title = "A Fourier-space description of oscillations in an inhomogeneous plasma. Part 2. Discrete approach",
      journal = {Journal of Plasma Physics},
         year = 1994,
       volume = {52},
       number = {2},
        pages = {265-296},
          doi = {10.1017/S0022377800017906},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1994JPlPh..52..265C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1994JPlPh..52..245S,
       author = {{Sedl{\'a}{\v{c}}ek}, Z. and {Cally}, P.~S.},
        title = "A Fourier-space description of oscillations in an inhomogeneous plasma. Part 1. Continuous Fourier transformation",
      journal = {Journal of Plasma Physics},
         year = 1994,
       volume = {52},
       number = {2},
        pages = {245-264},
          doi = {10.1017/S002237780001789X},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1994JPlPh..52..245S},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{1994smf..conf..251C,
       author = {{Charbonneau}, P. and {Cally}, P.~S. and {Bogdan}, T.~J.},
        title = "Modelling magnetoacoustic oscillations in sunspots: a progress report",
    booktitle = {Solar Magnetic Fields},
         year = 1994,
       editor = {{Sch{\"u}ssler}, Manfred and {Schmidt}, Wolfgang},
        pages = {251},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1994smf..conf..251C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1993ApJ...402..721C,
       author = {{Cally}, P.~S. and {Bogdan}, T.~J.},
        title = "Solar p-Modes in a Vertical Magnetic Field: Trapped and Damped pi -Modes",
      journal = {\apj},
         year = 1993,
       volume = {402},
        pages = {721},
          doi = {10.1086/172172},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1993ApJ...402..721C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1992ApJ...397..329R,
       author = {{Robb}, T.~D. and {Cally}, P.~S.},
        title = "Steady and Nonsteady Siphon Flow in Hot Coronal Loops",
      journal = {\apj},
         year = 1992,
       volume = {397},
        pages = {329},
          doi = {10.1086/171788},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1992ApJ...397..329R},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1992JPlPh..48..145C,
       author = {{Cally}, P.~S. and {Sedl{\'a}{\v{c}}ek}, Z.},
        title = "Phase mixing and surface-wave decay in an inhomogeneous plasma",
      journal = {Journal of Plasma Physics},
         year = 1992,
       volume = {48},
       number = {1},
        pages = {145-158},
          doi = {10.1017/S0022377800016433},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1992JPlPh..48..145C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1992JPlPh..47..321Z,
       author = {{Zorzan}, C. and {Cally}, P.~S.},
        title = "Resonant structures within incompressible ideal MHD",
      journal = {Journal of Plasma Physics},
         year = 1992,
       volume = {47},
       number = {2},
        pages = {321-347},
          doi = {10.1017/S0022377800024259},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1992JPlPh..47..321Z},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1991JPlPh..45..453C,
       author = {{Cally}, P.~S.},
        title = "Phase-mixing and surface waves: a new interpretation",
      journal = {Journal of Plasma Physics},
         year = 1991,
       volume = {45},
       number = {3},
        pages = {453-479},
          doi = {10.1017/S002237780001583X},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1991JPlPh..45..453C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1991ApJ...372..329C,
       author = {{Cally}, P.~S. and {Robb}, T.~D.},
        title = "Stability, Structure, and Evolution of Cool Loops",
      journal = {\apj},
         year = 1991,
       volume = {372},
        pages = {329},
          doi = {10.1086/169979},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1991ApJ...372..329C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{1991mcch.conf..103C,
       author = {{Cally}, P.~S.},
        title = "Why Heating is Not Necessary in the Transition Region or Upper Chromosphere (With 3 Figures)",
    booktitle = {Mechanisms of Chromospheric and Coronal Heating},
         year = 1991,
       editor = {{Ulmschneider}, Peter and {Priest}, Eric R. and {Rosner}, Robert},
        pages = {260},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1991mcch.conf..103C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1990ApJ...355..693C,
       author = {{Cally}, P.~S.},
        title = "Turbulent Thermal Conduction in the Solar Transition Region",
      journal = {\apj},
         year = 1990,
       volume = {355},
        pages = {693},
          doi = {10.1086/168802},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1990ApJ...355..693C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1990SoPh..126...69F,
       author = {{Fiedler}, R.~A.~S. and {Cally}, P.~S.},
        title = "Force and Energy Balance in the Transition Region Network",
      journal = {\solphys},
         year = 1990,
       volume = {126},
       number = {1},
        pages = {69-88},
          doi = {10.1007/BF00158299},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1990SoPh..126...69F},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1987SoPh..108..183C,
       author = {{Cally}, P.~S.},
        title = "Magnetohydrodynamic Tube Waves and High Speed Solar Wind Streams",
      journal = {\solphys},
         year = 1987,
       volume = {108},
       number = {1},
        pages = {183-189},
          doi = {10.1007/BF00152086},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1987SoPh..108..183C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1986SoPh..103..277C,
       author = {{Cally}, P.~S.},
        title = "Leaky and Non-Leaky Oscillations in Magnetic Flux Tubes",
      journal = {\solphys},
         year = 1986,
       volume = {103},
       number = {2},
        pages = {277-298},
          doi = {10.1007/BF00147830},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1986SoPh..103..277C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1985AuJPh..38..825C,
       author = {{Cally}, P.~S.},
        title = "Magnetohydrodynamic tube waves - Waves in fibrils",
      journal = {Australian Journal of Physics},
         year = 1985,
       volume = {38},
        pages = {825-837},
          doi = {10.1071/PH850825},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1985AuJPh..38..825C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1984A&A...136..121C,
       author = {{Cally}, P.~S.},
        title = "Magnetohydrodynamic critical levels and radiative damping",
      journal = {\aap},
         year = 1984,
       volume = {136},
       number = {1},
        pages = {121-126},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1984A&A...136..121C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1984SoPh...92...81S,
       author = {{Schwartz}, S.~J. and {Cally}, P.~S. and {Bel}, N.},
        title = "Chromospheric and coronal Alfv{\'e}nic oscillations in non-vertical magnetic fields",
      journal = {\solphys},
         year = 1984,
       volume = {92},
       number = {1-2},
        pages = {81-98},
          doi = {10.1007/BF00157237},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1984SoPh...92...81S},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1983SoPh...88...77C,
       author = {{Cally}, P.~S.},
        title = "Umbral Oscillations in the Presence of a Spreading Magnetic Field",
      journal = {\solphys},
         year = 1983,
       volume = {88},
       number = {1-2},
        pages = {77-102},
          doi = {10.1007/BF00196179},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1983SoPh...88...77C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1983SoPh...85...97C,
       author = {{Cally}, P.~S. and {Adam}, J.~A.},
        title = "On photospheric and chromospheric penumbral waves.",
      journal = {\solphys},
         year = 1983,
       volume = {85},
       number = {1},
        pages = {97-111},
          doi = {10.1007/BF00148261},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1983SoPh...85...97C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@INPROCEEDINGS{1983BAAS...15Q.706A,
       author = {{Adam}, J.~A. and {Cally}, P.~S.},
        title = "Photospheric and Chromospheric Penumbral Waves",
    booktitle = {Bulletin of the American Astronomical Society},
         year = 1983,
       volume = {15},
        pages = {706},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1983BAAS...15Q.706A},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1983GApFD..23...57C,
       author = {{Cally}, P.~S. and {Adam}, J.~A.},
        title = "Complex eigenvalue bounds in magnetoatmospheric shear flow. II",
      journal = {Geophysical and Astrophysical Fluid Dynamics},
         year = 1983,
       volume = {23},
       number = {1},
        pages = {57-67},
          doi = {10.1080/03091928308209040},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1983GApFD..23...57C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1983GApFD..23...43C,
       author = {{Cally}, P.~S.},
        title = "Complex eigenvalue bounds in magnetoatmospheric shear flow. I",
      journal = {Geophysical and Astrophysical Fluid Dynamics},
         year = 1983,
       volume = {23},
       number = {1},
        pages = {43-55},
          doi = {10.1080/03091928308209039},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1983GApFD..23...43C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1981JMP....22..348C,
       author = {{Cally}, P.~S. and {Monaghan}, J.~J.},
        title = "Statistical mechanics and the gravothermal catastrophe.",
      journal = {Journal of Mathematical Physics},
         year = 1981,
       volume = {22},
        pages = {348-351},
          doi = {10.1063/1.524886},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1981JMP....22..348C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{1981AuJPh..34..267C,
       author = {{Cally}, P.~S.},
        title = "The equilibrium statistical mechanics of self-gravitating systems",
      journal = {Australian Journal of Physics},
         year = 1981,
       volume = {34},
       number = {3},
        pages = {267-278},
          doi = {10.1071/PH810267},
       adsurl = {https://ui.adsabs.harvard.edu/abs/1981AuJPh..34..267C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@PHDTHESIS{1979PhDT.......233C,
       author = {{Cally}, Paul Stuart},
        title = "Many body problems in astrophysics",
       school = {Monash University, Australia},
         year = 1979,
       adsurl = {https://ui.adsabs.harvard.edu/abs/1979PhDT.......233C},
      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}


