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@ARTICLE{2022A&A...665A..50Y,
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@ARTICLE{2022A&A...665A...6D,
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@ARTICLE{2022arXiv220813749D,
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@ARTICLE{2022A&A...664A..91P,
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@ARTICLE{2022arXiv220710905Q,
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@ARTICLE{2022FrASS...9.8115D,
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@ARTICLE{2022A&A...661A..59D,
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@INPROCEEDINGS{2021AAS...23810603M,
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@ARTICLE{2021SciA....7.8406I,
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@ARTICLE{2020A&A...637A...1K,
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@ARTICLE{2020ApJ...889...95M,
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@ARTICLE{2019A&A...631A..80B,
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@ARTICLE{2019A&A...631A..33B,
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@ARTICLE{2019yCat..36310080B,
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@ARTICLE{2019A&A...623A..74D,
       author = {{de la Cruz Rodr{\'\i}guez}, J. and {Leenaarts}, J. and {Danilovic}, S. and {Uitenbroek}, H.},
        title = "STiC: A multiatom non-LTE PRD inversion code for full-Stokes solar observations",
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       volume = {623},
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          doi = {10.1051/0004-6361/201834464},
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@ARTICLE{2019AdSpR..63.1389J,
       author = {{Jur{\v{c}}{\'a}k}, Jan and {Collados}, Manuel and {Leenaarts}, Jorrit and {van Noort}, Michiel and {Schlichenmaier}, Rolf},
        title = "Recent advancements in the EST project",
      journal = {Advances in Space Research},
         year = 2019,
       volume = {63},
       number = {4},
        pages = {1389-1395},
          doi = {10.1016/j.asr.2018.06.034},
archivePrefix = {arXiv},
       eprint = {1811.00851},
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@ARTICLE{2019A&A...621A..35L,
       author = {{Libbrecht}, Tine and {de la Cruz Rodr{\'\i}guez}, Jaime and {Danilovic}, Sanja and {Leenaarts}, Jorrit and {Pazira}, Hiva},
        title = "Chromospheric condensations and magnetic field in a C3.6-class flare studied via He I D$\_{3}$ spectro-polarimetry",
      journal = {\aap},
         year = 2019,
       volume = {621},
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          doi = {10.1051/0004-6361/201833610},
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@ARTICLE{2019A&A...621A...1R,
       author = {{Robustini}, Carolina and {Esteban Pozuelo}, Sara and {Leenaarts}, Jorrit and {de la Cruz Rodr{\'\i}guez}, Jaime},
        title = "Chromospheric observations and magnetic configuration of a supergranular structure",
      journal = {\aap},
         year = 2019,
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          doi = {10.1051/0004-6361/201833246},
archivePrefix = {arXiv},
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@ARTICLE{2018A&A...620A.124D,
       author = {{da Silva Santos}, J.~M. and {de la Cruz Rodr{\'\i}guez}, J. and {Leenaarts}, J.},
        title = "Temperature constraints from inversions of synthetic solar optical, UV, and radio spectra",
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       volume = {620},
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          doi = {10.1051/0004-6361/201833664},
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       eprint = {1806.06682},
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@MISC{2018ascl.soft10014D,
       author = {{de la Cruz Rodr{\'\i}guez}, J. and {Leenaarts}, J. and {Danilovic}, S. and {Uitenbroek}, H.},
        title = "STiC: Stockholm inversion code",
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@ARTICLE{2018A&A...616A.136L,
       author = {{Leenaarts}, Jorrit},
        title = "Tracing the evolution of radiation-MHD simulations of solar and stellar atmospheres in the Lagrangian frame",
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         year = 2018,
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          doi = {10.1051/0004-6361/201833176},
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       eprint = {1805.06666},
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@ARTICLE{2018ApJ...860L..16B,
       author = {{Bastian}, T.~S. and {Chintzoglou}, G. and {De Pontieu}, B. and {Shimojo}, M. and {Schmit}, D. and {Leenaarts}, J. and {Loukitcheva}, M.},
        title = "Erratum: {textquotedblleft}A First Comparison of Millimeter Continuum and Mg II Ultraviolet Line Emission from the Solar Chromosphere{textquotedblright} (<A href=``http://doi.org/10.3847/2041-8213/aa844c''>2017, ApJL, 845, L19</A>)",
      journal = {\apjl},
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@ARTICLE{2018A&A...614A.110Z,
       author = {{Zacharias}, P. and {Hansteen}, V.~H. and {Leenaarts}, J. and {Carlsson}, M. and {Gudiksen}, B.~V.},
        title = "Disentangling flows in the solar transition region",
      journal = {\aap},
         year = 2018,
       volume = {614},
          eid = {A110},
        pages = {A110},
          doi = {10.1051/0004-6361/201732055},
archivePrefix = {arXiv},
       eprint = {1804.07513},
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@ARTICLE{2018A&A...612A..28L,
       author = {{Leenaarts}, Jorrit and {de la Cruz Rodr{\'\i}guez}, Jaime and {Danilovic}, Sanja and {Scharmer}, G{\"o}ran and {Carlsson}, Mats},
        title = "Chromospheric heating during flux emergence in the solar atmosphere",
      journal = {\aap},
         year = 2018,
       volume = {612},
          eid = {A28},
        pages = {A28},
          doi = {10.1051/0004-6361/201732027},
archivePrefix = {arXiv},
       eprint = {1712.00474},
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@ARTICLE{2018A&A...611A..62B,
       author = {{Bj{\o}rgen}, Johan P. and {Sukhorukov}, Andrii V. and {Leenaarts}, Jorrit and {Carlsson}, Mats and {de la Cruz Rodr{\'\i}guez}, Jaime and {Scharmer}, G{\"o}ran B. and {Hansteen}, Viggo H.},
        title = "Three-dimensional modeling of the Ca II H and K lines in the solar atmosphere",
      journal = {\aap},
         year = 2018,
       volume = {611},
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          doi = {10.1051/0004-6361/201731926},
archivePrefix = {arXiv},
       eprint = {1712.01045},
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@ARTICLE{2018A&A...609A..14R,
       author = {{Robustini}, Carolina and {Leenaarts}, Jorrit and {de la Cruz Rodr{\'\i}guez}, Jaime},
        title = "The chromosphere above a {\ensuremath{\delta}}-sunspot in the presence of fan-shaped jets",
      journal = {\aap},
         year = 2018,
       volume = {609},
          eid = {A14},
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          doi = {10.1051/0004-6361/201731504},
archivePrefix = {arXiv},
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@ARTICLE{2017ApJ...847..141S,
       author = {{Schmit}, D. and {Sukhorukov}, A.~V. and {De Pontieu}, B. and {Leenaarts}, J. and {Bethge}, C. and {Winebarger}, A. and {Auch{\`e}re}, F. and {Bando}, T. and {Ishikawa}, R. and {Kano}, R. and {Kobayashi}, K. and {Narukage}, N. and {Trujillo Bueno}, J.},
        title = "Comparison of Solar Fine Structure Observed Simultaneously in Ly{\ensuremath{\alpha}} and Mg II h",
      journal = {\apj},
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       volume = {847},
       number = {2},
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@ARTICLE{2017ApJ...846...40L,
       author = {{Lin}, Hsiao-Hsuan and {Carlsson}, Mats and {Leenaarts}, Jorrit},
        title = "The Formation of IRIS Diagnostics. IX. The Formation of the C I 135.58 NM Line in the Solar Atmosphere",
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       volume = {846},
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archivePrefix = {arXiv},
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@INPROCEEDINGS{2017SPD....48.0102K,
       author = {{Kerr}, Graham Stewart and {Allred}, Joel C. and {Leenaarts}, Jorrit and {Butler}, Elizabeth and {Kowalski}, Adam},
        title = "Simulating the Mg II NUV Spectra \& C II Resonance Lines During Solar Flares",
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@ARTICLE{2017ApJ...845L..19B,
       author = {{Bastian}, T.~S. and {Chintzoglou}, G. and {De Pontieu}, B. and {Shimojo}, M. and {Schmit}, D. and {Leenaarts}, J. and {Loukitcheva}, M.},
        title = "A First Comparison of Millimeter Continuum and Mg II Ultraviolet Line Emission from the Solar Chromosphere",
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@ARTICLE{2017A&A...604A..49P,
       author = {{Pazira}, H. and {Kiselman}, D. and {Leenaarts}, J.},
        title = "Solar off-limb emission of the O I 7772 {\r{A}} line",
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@ARTICLE{2017MNRAS.468.4311L,
       author = {{Lind}, K. and {Amarsi}, A.~M. and {Asplund}, M. and {Barklem}, P.~S. and {Bautista}, M. and {Bergemann}, M. and {Collet}, R. and {Kiselman}, D. and {Leenaarts}, J. and {Pereira}, T.~M.~D.},
        title = "Non-LTE line formation of Fe in late-type stars - IV. Modelling of the solar centre-to-limb variation in 3D",
      journal = {\mnras},
         year = 2017,
       volume = {468},
       number = {4},
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@ARTICLE{2017ApJ...839...22H,
       author = {{Hansteen}, V.~H. and {Archontis}, V. and {Pereira}, T.~M.~D. and {Carlsson}, M. and {Rouppe van der Voort}, L. and {Leenaarts}, J.},
        title = "Bombs and Flares at the Surface and Lower Atmosphere of the Sun",
      journal = {\apj},
         year = 2017,
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          eid = {22},
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@ARTICLE{2017A&A...599A.118B,
       author = {{Bj{\o}rgen}, Johan P. and {Leenaarts}, Jorrit},
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@ARTICLE{2017A&A...598A..33L,
       author = {{Libbrecht}, Tine and {Joshi}, Jayant and {de la Cruz Rodr{\'\i}guez}, Jaime and {Leenaarts}, Jorrit and {Ramos}, Andr{\'e}s Asensio},
        title = "Observations of Ellerman bomb emission features in He I D$\_{3}$ and He I 10 830 {\r{A}}",
      journal = {\aap},
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          eid = {A33},
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@INPROCEEDINGS{2017psio.confE..25L,
       author = {{Leenaarts}, Jorrit},
        title = "Helium lines in the solar spectrum: spatial structure in He I 10830 and the anomalous intensity of the resonance lines",
    booktitle = {SOLARNET IV: The Physics of the Sun from the Interior to the Outer Atmosphere},
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@ARTICLE{2017A&A...597A.102G,
       author = {{Golding}, T.~P. and {Leenaarts}, J. and {Carlsson}, M.},
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@ARTICLE{2017A&A...597A..46S,
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@ARTICLE{2017A&A...597A...6N,
       author = {{Nordlander}, T. and {Amarsi}, A.~M. and {Lind}, K. and {Asplund}, M. and {Barklem}, P.~S. and {Casey}, A.~R. and {Collet}, R. and {Leenaarts}, J.},
        title = "3D NLTE analysis of the most iron-deficient star, SMSS0313-6708",
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@ARTICLE{2016ApJ...830L..30D,
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        title = "Non-LTE Inversions of the Mg II h \& k and UV Triplet Lines",
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@ARTICLE{2016A&A...594A.104L,
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@INPROCEEDINGS{2016SPIE.9905E..08N,
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@ARTICLE{2016A&A...590A..57R,
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@ARTICLE{2016MNRAS.455.3735A,
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@ARTICLE{2016ApJ...817..125G,
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@ARTICLE{2015MNRAS.454L..11A,
       author = {{Amarsi}, A.~M. and {Asplund}, M. and {Collet}, R. and {Leenaarts}, J.},
        title = "The Galactic chemical evolution of oxygen inferred from 3D non-LTE spectral-line-formation calculations.",
      journal = {\mnras},
         year = 2015,
       volume = {454},
        pages = {L11-L15},
          doi = {10.1093/mnrasl/slv122},
archivePrefix = {arXiv},
       eprint = {1508.04857},
 primaryClass = {astro-ph.SR},
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@ARTICLE{2015ApJ...811..127S,
       author = {{Schmit}, D. and {Bryans}, P. and {De Pontieu}, B. and {McIntosh}, S. and {Leenaarts}, J. and {Carlsson}, M.},
        title = "Observed Variability of the Solar Mg II h Spectral Line",
      journal = {\apj},
         year = 2015,
       volume = {811},
       number = {2},
          eid = {127},
        pages = {127},
          doi = {10.1088/0004-637X/811/2/127},
archivePrefix = {arXiv},
       eprint = {1508.04714},
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@ARTICLE{2015ApJ...811...81R,
       author = {{Rathore}, Bhavna and {Carlsson}, Mats and {Leenaarts}, Jorrit and {De Pontieu}, Bart},
        title = "The Formation of IRIS Diagnostics. VI. The Diagnostic Potential of the C II Lines at 133.5 nm in the Solar Atmosphere",
      journal = {\apj},
         year = 2015,
       volume = {811},
       number = {2},
          eid = {81},
        pages = {81},
          doi = {10.1088/0004-637X/811/2/81},
archivePrefix = {arXiv},
       eprint = {1508.04423},
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@ARTICLE{2015ApJ...809L..30C,
       author = {{Carlsson}, Mats and {Leenaarts}, Jorrit and {De Pontieu}, Bart},
        title = "What Do IRIS Observations of Mg II k Tell Us about the Solar Plage Chromosphere?",
      journal = {\apjl},
         year = 2015,
       volume = {809},
       number = {2},
          eid = {L30},
        pages = {L30},
          doi = {10.1088/2041-8205/809/2/L30},
archivePrefix = {arXiv},
       eprint = {1508.04888},
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@ARTICLE{2015ApJ...803...65S,
       author = {{{\v{S}}t{\v{e}}p{\'a}n}, J. and {Trujillo Bueno}, J. and {Leenaarts}, J. and {Carlsson}, M.},
        title = "Three-dimensional Radiative Transfer Simulations of the Scattering Polarization of the Hydrogen Ly{\ensuremath{\alpha}} Line in a Magnetohydrodynamic Model of the Chromosphere-Corona Transition Region",
      journal = {\apj},
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       volume = {803},
       number = {2},
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        pages = {65},
          doi = {10.1088/0004-637X/803/2/65},
archivePrefix = {arXiv},
       eprint = {1501.06382},
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@ARTICLE{2015ApJ...802..136L,
       author = {{Leenaarts}, Jorrit and {Carlsson}, Mats and {Rouppe van der Voort}, Luc},
        title = "On Fibrils and Field Lines: the Nature of H{\ensuremath{\alpha}} Fibrils in the Solar Chromosphere",
      journal = {\apj},
         year = 2015,
       volume = {802},
       number = {2},
          eid = {136},
        pages = {136},
          doi = {10.1088/0004-637X/802/2/136},
archivePrefix = {arXiv},
       eprint = {1502.00295},
 primaryClass = {astro-ph.SR},
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@INPROCEEDINGS{2014AGUFMSH51C4176M,
       author = {{Mart{\'\i}nez-Sykora}, J. and {De Pontieu}, B. and {Hansteen}, V.~H. and {Pereira}, T.~M.~D. and {Leenaarts}, J. and {Carlsson}, M.},
        title = "Observables of Ion-Neutral Interaction Effects in the Solar Chromosphere",
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         year = 2014,
       volume = {2014},
          eid = {SH51C-4176},
        pages = {SH51C-4176},
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@INPROCEEDINGS{2014AGUFMSH51C4174F,
       author = {{Fleck}, B. and {De Pontieu}, B. and {Leenaarts}, J. and {Pereira}, T.~M.~D. and {Straus}, T.},
        title = "Wave Propagation in the Internetwork Chromosphere: Comparing IRIS Observations of Mg II h and k with Simulations",
    booktitle = {AGU abstracts},
         year = 2014,
       volume = {2014},
          eid = {SH51C-4174},
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@ARTICLE{2014SoPh..289.2733D,
       author = {{De Pontieu}, B. and {Title}, A.~M. and {Lemen}, J.~R. and {Kushner}, G.~D. and {Akin}, D.~J. and {Allard}, B. and {Berger}, T. and {Boerner}, P. and {Cheung}, M. and {Chou}, C. and {Drake}, J.~F. and {Duncan}, D.~W. and {Freeland}, S. and {Heyman}, G.~F. and {Hoffman}, C. and {Hurlburt}, N.~E. and {Lindgren}, R.~W. and {Mathur}, D. and {Rehse}, R. and {Sabolish}, D. and {Seguin}, R. and {Schrijver}, C.~J. and {Tarbell}, T.~D. and {W{\"u}lser}, J. -P. and {Wolfson}, C.~J. and {Yanari}, C. and {Mudge}, J. and {Nguyen-Phuc}, N. and {Timmons}, R. and {van Bezooijen}, R. and {Weingrod}, I. and {Brookner}, R. and {Butcher}, G. and {Dougherty}, B. and {Eder}, J. and {Knagenhjelm}, V. and {Larsen}, S. and {Mansir}, D. and {Phan}, L. and {Boyle}, P. and {Cheimets}, P.~N. and {DeLuca}, E.~E. and {Golub}, L. and {Gates}, R. and {Hertz}, E. and {McKillop}, S. and {Park}, S. and {Perry}, T. and {Podgorski}, W.~A. and {Reeves}, K. and {Saar}, S. and {Testa}, P. and {Tian}, H. and {Weber}, M. and {Dunn}, C. and {Eccles}, S. and {Jaeggli}, S.~A. and {Kankelborg}, C.~C. and {Mashburn}, K. and {Pust}, N. and {Springer}, L. and {Carvalho}, R. and {Kleint}, L. and {Marmie}, J. and {Mazmanian}, E. and {Pereira}, T.~M.~D. and {Sawyer}, S. and {Strong}, J. and {Worden}, S.~P. and {Carlsson}, M. and {Hansteen}, V.~H. and {Leenaarts}, J. and {Wiesmann}, M. and {Aloise}, J. and {Chu}, K. -C. and {Bush}, R.~I. and {Scherrer}, P.~H. and {Brekke}, P. and {Mart{\'{\i}}nez-Sykora}, J. and {Lites}, B.~W. and {McIntosh}, S.~W. and {Uitenbroek}, H. and {Okamoto}, T.~J. and {Gummin}, M.~A. and {Auker}, G. and {Jerram}, P. and {Pool}, P. and {Waltham}, N.},
        title = "The Interface Region Imaging Spectrograph (IRIS)",
      journal = {\solphys},
         year = 2014,
       volume = {289},
       number = {7},
        pages = {2733-2779},
          doi = {10.1007/s11207-014-0485-y},
archivePrefix = {arXiv},
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@INPROCEEDINGS{2014AAS...22432305F,
       author = {{Fleck}, Bernard and {Straus}, Thomas and {De Pontieu}, Bart and {Leenaarts}, Jorrit and {Pereira}, Tiago M.~D.},
        title = "On the Signatures of Waves and Oscillations in IRIS Observations",
    booktitle = {AAS abstracts \#224},
         year = 2014,
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@ARTICLE{2014ApJ...784L..17L,
       author = {{Leenaarts}, Jorrit and {de la Cruz Rodr{\'\i}guez}, Jaime and {Kochukhov}, Oleg and {Carlsson}, Mats},
        title = "The Effect of Isotopic Splitting on the Bisector and Inversions of the Solar Ca II 854.2 nm Line",
      journal = {\apjl},
         year = 2014,
       volume = {784},
       number = {1},
          eid = {L17},
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          doi = {10.1088/2041-8205/784/1/L17},
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@ARTICLE{2014ApJ...784...30G,
       author = {{Golding}, Thomas Peter and {Carlsson}, Mats and {Leenaarts}, Jorrit},
        title = "Detailed and Simplified Nonequilibrium Helium Ionization in the Solar Atmosphere",
      journal = {\apj},
         year = 2014,
       volume = {784},
       number = {1},
          eid = {30},
        pages = {30},
          doi = {10.1088/0004-637X/784/1/30},
archivePrefix = {arXiv},
       eprint = {1401.7562},
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@ARTICLE{2013ApJ...778..143P,
       author = {{Pereira}, T.~M.~D. and {Leenaarts}, J. and {De Pontieu}, B. and {Carlsson}, M. and {Uitenbroek}, H.},
        title = "The Formation of IRIS Diagnostics. III. Near-ultraviolet Spectra and Images",
      journal = {\apj},
         year = 2013,
       volume = {778},
       number = {2},
          eid = {143},
        pages = {143},
          doi = {10.1088/0004-637X/778/2/143},
archivePrefix = {arXiv},
       eprint = {1310.1926},
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@ARTICLE{2013ApJ...772...90L,
       author = {{Leenaarts}, J. and {Pereira}, T.~M.~D. and {Carlsson}, M. and {Uitenbroek}, H. and {De Pontieu}, B.},
        title = "The Formation of IRIS Diagnostics. II. The Formation of the Mg II h\&k Lines in the Solar Atmosphere",
      journal = {\apj},
         year = 2013,
       volume = {772},
       number = {2},
          eid = {90},
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@ARTICLE{2013ApJ...772...89L,
       author = {{Leenaarts}, J. and {Pereira}, T.~M.~D. and {Carlsson}, M. and {Uitenbroek}, H. and {De Pontieu}, B.},
        title = "The Formation of IRIS Diagnostics. I. A Quintessential Model Atom of Mg II and General Formation Properties of the Mg II h\&k Lines",
      journal = {\apj},
         year = 2013,
       volume = {772},
       number = {2},
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@ARTICLE{2013ApJ...771...66M,
       author = {{Mart{\'\i}nez-Sykora}, Juan and {De Pontieu}, Bart and {Leenaarts}, Jorrit and {Pereira}, Tiago M.~D. and {Carlsson}, Mats and {Hansteen}, Viggo and {Stern}, Julie V. and {Tian}, Hui and {McIntosh}, Scott W. and {Rouppe van der Voort}, Luc},
        title = "A Detailed Comparison between the Observed and Synthesized Properties of a Simulated Type II Spicule",
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       volume = {771},
       number = {1},
          eid = {66},
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@ARTICLE{2013A&A...554A.118P,
       author = {{Pereira}, T.~M.~D. and {Asplund}, M. and {Collet}, R. and {Thaler}, I. and {Trampedach}, R. and {Leenaarts}, J.},
        title = "How realistic are solar model atmospheres?",
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         year = 2013,
       volume = {554},
          eid = {A118},
        pages = {A118},
          doi = {10.1051/0004-6361/201321227},
archivePrefix = {arXiv},
       eprint = {1304.4932},
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@INPROCEEDINGS{2012ASPC..463...15D,
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        title = "Chromospheric Magnetic Fields: Observations, Simulations and their Interpretation",
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@ARTICLE{2012ApJ...758L..43S,
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        title = "The Hanle Effect of Ly{\ensuremath{\alpha}} in a Magnetohydrodynamic Model of the Solar Transition Region",
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         year = 2012,
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@ARTICLE{2012A&A...543A.109L,
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          doi = {10.1051/0004-6361/201219394},
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@ARTICLE{2012A&A...543A..34D,
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         year = 2012,
       volume = {543},
          eid = {A34},
        pages = {A34},
          doi = {10.1051/0004-6361/201218825},
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       eprint = {1205.3171},
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@ARTICLE{2012ApJ...749..136L,
       author = {{Leenaarts}, J. and {Carlsson}, M. and {Rouppe van der Voort}, L.},
        title = "The Formation of the H{\ensuremath{\alpha}} Line in the Solar Chromosphere",
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         year = 2012,
       volume = {749},
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          eid = {136},
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@INPROCEEDINGS{2012decs.confE..80D,
       author = {{de la Cruz Rodrigu{\'{e}}z}, J. and {Socas-Navarro}, H. and {Carlsson}, M. and {Leenaarts}, J.},
        title = "NLTE inversions from a 3D MHD Chromospheric simulation",
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@INPROCEEDINGS{2012decs.confE..15L,
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@INPROCEEDINGS{2012decs.confE..14L,
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        title = "The formation of the Halpha line in the solar chromosphere",
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@INPROCEEDINGS{2012decs.confE..13P,
       author = {{Pereira}, Tiago M.~D. and {Carlsson}, Mats and {Leenaarts}, Jorrit and {Uitenbroek}, Han and {De Pontieu}, Bart and {Mart{\'{\i}}nez-Sykora}, Juan},
        title = "Potential for diagnostics with IRIS and Mg II lines",
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@ARTICLE{2012A&A...539A..39C,
       author = {{Carlsson}, M. and {Leenaarts}, J.},
        title = "Approximations for radiative cooling and heating in the solar chromosphere",
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@ARTICLE{2011A&A...531A.154G,
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        title = "The stellar atmosphere simulation code Bifrost. Code description and validation",
      journal = {\aap},
         year = 2011,
       volume = {531},
          eid = {A154},
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          doi = {10.1051/0004-6361/201116520},
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@ARTICLE{2011A&A...531A..17R,
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        title = "Quiet-Sun imaging asymmetries in Na I D$\_{1}$ compared with other strong Fraunhofer lines",
      journal = {\aap},
         year = 2011,
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@ARTICLE{2011A&A...530A.124L,
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@MISC{2010ascl.soft11014F,
       author = {{Freytag}, Bernd and {Steffen}, Matthias and {Wedemeyer-B{\"o}hm}, Sven and {Ludwig}, Hans-G{\"u}nter and {Leenaarts}, Jorrit and {Schaffenberger}, Werner and {Allard}, France and {Chiavassa}, Andrea and {H{\"o}fner}, Susanne and {Kamp}, Inga and {Steiner}, Oskar},
        title = "CO5BOLD: COnservative COde for the COmputation of COmpressible COnvection in a BOx of L Dimensions with l=2,3",
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@ARTICLE{2010A&A...517A..49H,
       author = {{Hayek}, W. and {Asplund}, M. and {Carlsson}, M. and {Trampedach}, R. and {Collet}, R. and {Gudiksen}, B.~V. and {Hansteen}, V.~H. and {Leenaarts}, J.},
        title = "Radiative transfer with scattering for domain-decomposed 3D MHD simulations of cool stellar atmospheres. Numerical methods and application to the quiet, non-magnetic, surface of a solar-type star",
      journal = {\aap},
         year = 2010,
       volume = {517},
          eid = {A49},
        pages = {A49},
          doi = {10.1051/0004-6361/201014210},
archivePrefix = {arXiv},
       eprint = {1007.2760},
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@ARTICLE{2010ApJ...709.1362L,
       author = {{Leenaarts}, J. and {Rutten}, R.~J. and {Reardon}, K. and {Carlsson}, M. and {Hansteen}, V.},
        title = "The Quiet Solar Atmosphere Observed and Simulated in Na I D$\_{1}$",
      journal = {\apj},
         year = 2010,
       volume = {709},
       number = {2},
        pages = {1362-1373},
          doi = {10.1088/0004-637X/709/2/1362},
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@ARTICLE{2010MmSAI..81..576L,
       author = {{Leenaarts}, J.},
        title = "Numerical simulations of the quiet chromosphere.",
      journal = {\memsai},
         year = 2010,
       volume = {81},
        pages = {576},
archivePrefix = {arXiv},
       eprint = {1001.0888},
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@INPROCEEDINGS{2009ASPC..415...87L,
       author = {{Leenaarts}, J. and {Carlsson}, M.},
        title = "MULTI3D: A Domain-Decomposed 3D Radiative Transfer Code",
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         year = 2009,
       editor = {{Lites}, B. and {Cheung}, M. and {Magara}, T. and {Mariska}, J. and {Reeves}, K.},
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       volume = {415},
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@ARTICLE{2009ApJ...705..272R,
       author = {{Rouppe van der Voort}, L. and {Leenaarts}, J. and {de Pontieu}, B. and {Carlsson}, M. and {Vissers}, G.},
        title = "On-disk Counterparts of Type II Spicules in the Ca II 854.2 nm and H{\ensuremath{\alpha}} Lines",
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       volume = {705},
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@ARTICLE{2009ApJ...694L.128L,
       author = {{Leenaarts}, J. and {Carlsson}, M. and {Hansteen}, V. and {Rouppe van der Voort}, L.},
        title = "Three-Dimensional Non-LTE Radiative Transfer Computation of the CA 8542 Infrared Line From a Radiation-MHD Simulation",
      journal = {\apjl},
         year = 2009,
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       number = {2},
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@ARTICLE{2007A&A...473..625L,
       author = {{Leenaarts}, J. and {Carlsson}, M. and {Hansteen}, V. and {Rutten}, R.~J.},
        title = "Non-equilibrium hydrogen ionization in 2D simulations of the solar atmosphere",
      journal = {\aap},
         year = 2007,
       volume = {473},
       number = {2},
        pages = {625-632},
          doi = {10.1051/0004-6361:20078161},
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@PHDTHESIS{2007PhDT.......304L,
       author = {{Leenaarts}, J.},
        title = "Numerical simulations of the solar atmosphere",
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@ARTICLE{2007A&A...471..977W,
       author = {{Wedemeyer-B{\"o}hm}, S. and {Ludwig}, H.~G. and {Steffen}, M. and {Leenaarts}, J. and {Freytag}, B.},
        title = "Inter-network regions of the Sun at millimetre wavelengths",
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         year = 2007,
       volume = {471},
       number = {3},
        pages = {977-991},
          doi = {10.1051/0004-6361:20077588},
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@INPROCEEDINGS{2007ASPC..368..103L,
       author = {{Leenaarts}, J. and {Wedemeyer-B{\"o}hm}, S. and {Carlsson}, M. and {Hansteen}, V.~H.},
        title = "Non-equilibrium Hydrogen Ionization in the Solar Atmosphere",
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         year = 2007,
       editor = {{Heinzel}, P. and {Dorotovi{\v{c}}}, I. and {Rutten}, R.~J.},
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@PHDTHESIS{2007PhDT.......331L,
       author = {{Leenaarts}, Jorrit},
        title = "Numerical simulations of the solar atmosphere",
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@INPROCEEDINGS{2006ASPC..354..306L,
       author = {{Leenaarts}, J. and {Wedemeyer-B{\"o}hm}, S.},
        title = "Dynamic Hydrogen Ionization in Simulations of the Solar Chromosphere",
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@ARTICLE{2006A&A...460..301L,
       author = {{Leenaarts}, J. and {Wedemeyer-B{\"o}hm}, S.},
        title = "Time-dependent hydrogen ionisation in 3D simulations of the solar chromosphere. Methods and first results",
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@ARTICLE{2006MNRAS.371..793G,
       author = {{Gieles}, M. and {Portegies Zwart}, S.~F. and {Baumgardt}, H. and {Athanassoula}, E. and {Lamers}, H.~J.~G.~L.~M. and {Sipior}, M. and {Leenaarts}, J.},
        title = "Star cluster disruption by giant molecular clouds",
      journal = {\mnras},
         year = 2006,
       volume = {371},
       number = {2},
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          doi = {10.1111/j.1365-2966.2006.10711.x},
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@ARTICLE{2006A&A...452L..15L,
       author = {{Leenaarts}, J. and {Rutten}, R.~J. and {Carlsson}, M. and {Uitenbroek}, H.},
        title = "A comparison of solar proxy-magnetometry diagnostics",
      journal = {\aap},
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@ARTICLE{2006A&A...449.1209L,
       author = {{Leenaarts}, J. and {Rutten}, R.~J. and {S{\"u}tterlin}, P. and {Carlsson}, M. and {Uitenbroek}, H.},
        title = "DOT tomography of the solar atmosphere. VI. Magnetic elements as bright points in the blue wing of H{\ensuremath{\alpha}}",
      journal = {\aap},
         year = 2006,
       volume = {449},
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@INPROCEEDINGS{2005ESASP.596E..15L,
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        title = "Small Scale Magnetic Elements as Bright Points in the Blue H{\ensuremath{\alpha}} Wing",
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@ARTICLE{2005A&A...431..687L,
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        title = "DOT tomography of the solar atmosphere. III. Observations and simulations of reversed granulation",
      journal = {\aap},
         year = 2005,
       volume = {431},
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@INPROCEEDINGS{2004IAUS..223..597R,
       author = {{Rutten}, R.~J. and {Bettonvil}, F.~C.~M. and {Hammerschlag}, R.~H. and {J{\"a}gers}, A.~P.~L. and {Leenaarts}, J. and {Snik}, F. and {S{\"u}tterlin}, P. and {Tziotziou}, K. and {de Wijn}, A.~G.},
        title = "The Dutch Open Telescope on La Palma",
    booktitle = {Multi-Wavelength Investigations of Solar Activity},
         year = 2004,
       editor = {{Stepanov}, Alexander V. and {Benevolenskaya}, Elena E. and {Kosovichev}, Alexander G.},
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